GCC Code Coverage Report

Directory: ./
File: openvdb/openvdb/tree/LeafManager.h
Date: 2022-07-25 17:40:05
Exec Total Coverage
Lines: 185 220 84.1%
Functions: 804 3872 20.8%
Branches: 2083 14398 14.5%
Line Branch Exec Source
1 // Copyright Contributors to the OpenVDB Project
2 // SPDX-License-Identifier: MPL-2.0
3
4 /// @file LeafManager.h
5 ///
6 /// @brief A LeafManager manages a linear array of pointers to a given tree's
7 /// leaf nodes, as well as optional auxiliary buffers (one or more per leaf)
8 /// that can be swapped with the leaf nodes' voxel data buffers.
9 /// @details The leaf array is useful for multithreaded computations over
10 /// leaf voxels in a tree with static topology but varying voxel values.
11 /// The auxiliary buffers are convenient for temporal integration.
12 /// Efficient methods are provided for multithreaded swapping and synching
13 /// (i.e., copying the contents) of these buffers.
14
15 #ifndef OPENVDB_TREE_LEAFMANAGER_HAS_BEEN_INCLUDED
16 #define OPENVDB_TREE_LEAFMANAGER_HAS_BEEN_INCLUDED
17
18 #include <openvdb/Types.h>
19 #include <openvdb/tree/RootNode.h> // for NodeChain
20 #include <tbb/blocked_range.h>
21 #include <tbb/parallel_for.h>
22 #include <tbb/parallel_reduce.h>
23 #include <deque>
24 #include <functional>
25 #include <type_traits>
26
27
28 namespace openvdb {
29 OPENVDB_USE_VERSION_NAMESPACE
30 namespace OPENVDB_VERSION_NAME {
31 namespace tree {
32
33 namespace leafmgr {
34
35 //@{
36 /// Useful traits for Tree types
37 template<typename TreeT> struct TreeTraits {
38 static const bool IsConstTree = false;
39 using LeafIterType = typename TreeT::LeafIter;
40 };
41 template<typename TreeT> struct TreeTraits<const TreeT> {
42 static const bool IsConstTree = true;
43 using LeafIterType = typename TreeT::LeafCIter;
44 };
45 //@}
46
47 } // namespace leafmgr
48
49
50 /// This helper class implements LeafManager methods that need to be
51 /// specialized for const vs. non-const trees.
52 template<typename ManagerT>
53 struct LeafManagerImpl
54 {
55 using RangeT = typename ManagerT::RangeType;
56 using LeafT = typename ManagerT::LeafType;
57 using BufT = typename ManagerT::BufferType;
58
59 633 static inline void doSwapLeafBuffer(const RangeT& r, size_t auxBufferIdx,
60 LeafT** leafs, BufT* bufs, size_t bufsPerLeaf)
61 {
62
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 34953 for (size_t n = r.begin(), m = r.end(), N = bufsPerLeaf; n != m; ++n) {
63 34320 leafs[n]->swap(bufs[n * N + auxBufferIdx]);
64 }
65 633 }
66 };
67
68
69 ////////////////////////////////////////
70
71
72 /// @brief This class manages a linear array of pointers to a given tree's
73 /// leaf nodes, as well as optional auxiliary buffers (one or more per leaf)
74 /// that can be swapped with the leaf nodes' voxel data buffers.
75 /// @details The leaf array is useful for multithreaded computations over
76 /// leaf voxels in a tree with static topology but varying voxel values.
77 /// The auxiliary buffers are convenient for temporal integration.
78 /// Efficient methods are provided for multithreaded swapping and sync'ing
79 /// (i.e., copying the contents) of these buffers.
80 ///
81 /// @note Buffer index 0 denotes a leaf node's internal voxel data buffer.
82 /// Any auxiliary buffers are indexed starting from one.
83 template<typename TreeT>
84 class LeafManager
85 {
86 public:
87 using TreeType = TreeT;
88 using ValueType = typename TreeT::ValueType;
89 using RootNodeType = typename TreeT::RootNodeType;
90 using NonConstLeafType = typename TreeType::LeafNodeType;
91 using LeafType = typename CopyConstness<TreeType, NonConstLeafType>::Type;
92 using LeafNodeType = LeafType;
93 using LeafIterType = typename leafmgr::TreeTraits<TreeT>::LeafIterType;
94 using NonConstBufferType = typename LeafType::Buffer;
95 using BufferType = typename CopyConstness<TreeType, NonConstBufferType>::Type;
96 using RangeType = tbb::blocked_range<size_t>; // leaf index range
97 static const Index DEPTH = 2; // root + leaf nodes
98
99 static const bool IsConstTree = leafmgr::TreeTraits<TreeT>::IsConstTree;
100
101 class LeafRange
102 {
103 public:
104 class Iterator
105 {
106 public:
107 145428 Iterator(const LeafRange& range, size_t pos): mRange(range), mPos(pos)
108 {
109 ✗ assert(this->isValid());
110 }
111 Iterator(const Iterator&) = default;
112 Iterator& operator=(const Iterator&) = default;
113 /// Advance to the next leaf node.
114 21429568 Iterator& operator++() { ++mPos; return *this; }
115 /// Return a reference to the leaf node to which this iterator is pointing.
116 169502574 LeafType& operator*() const { return mRange.mLeafManager.leaf(mPos); }
117 /// Return a pointer to the leaf node to which this iterator is pointing.
118 818760 LeafType* operator->() const { return &(this->operator*()); }
119 /// @brief Return the nth buffer for the leaf node to which this iterator is pointing,
120 /// where n = @a bufferIdx and n = 0 corresponds to the leaf node's own buffer.
121 BufferType& buffer(size_t bufferIdx)
122 {
123 79526 return mRange.mLeafManager.getBuffer(mPos, bufferIdx);
124 }
125 /// Return the index into the leaf array of the current leaf node.
126
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 165345 size_t pos() const { return mPos; }
127 /// Return @c true if the position of this iterator is in a valid range.
128 145428 bool isValid() const { return mPos>=mRange.mBegin && mPos<=mRange.mEnd; }
129 /// Return @c true if this iterator is not yet exhausted.
130
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 21138810 bool test() const { return mPos < mRange.mEnd; }
131 /// Return @c true if this iterator is not yet exhausted.
132 operator bool() const { return this->test(); }
133 /// Return @c true if this iterator is exhausted.
134 bool empty() const { return !this->test(); }
135 bool operator!=(const Iterator& other) const
136 {
137
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 20402033 return (mPos != other.mPos) || (&mRange != &other.mRange);
138 }
139 bool operator==(const Iterator& other) const { return !(*this != other); }
140 const LeafRange& leafRange() const { return mRange; }
141
142 private:
143 const LeafRange& mRange;
144 size_t mPos;
145 };// end Iterator
146
147 42525 LeafRange(size_t begin, size_t end, const LeafManager& leafManager, size_t grainSize=1)
148 : mEnd(end)
149 , mBegin(begin)
150 , mGrainSize(grainSize)
151 42525 , mLeafManager(leafManager)
152 {
153 }
154
155
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 286480 Iterator begin() const {return Iterator(*this, mBegin);}
156
157
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 2104 Iterator end() const {return Iterator(*this, mEnd);}
158
159 336399 size_t size() const { return mEnd - mBegin; }
160
161 size_t grainsize() const { return mGrainSize; }
162
163 const LeafManager& leafManager() const { return mLeafManager; }
164
165
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 22098 bool empty() const {return !(mBegin < mEnd);}
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 234963 bool is_divisible() const {return mGrainSize < this->size();}
168
169 101436 LeafRange(LeafRange& r, tbb::split)
170 101436 : mEnd(r.mEnd)
171 101436 , mBegin(doSplit(r))
172 101436 , mGrainSize(r.mGrainSize)
173 101436 , mLeafManager(r.mLeafManager)
174 {
175 }
176
177 private:
178 size_t mEnd, mBegin, mGrainSize;
179 const LeafManager& mLeafManager;
180
181 202465 static size_t doSplit(LeafRange& r)
182 {
183
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 202465 assert(r.is_divisible());
184 202465 size_t middle = r.mBegin + (r.mEnd - r.mBegin) / 2u;
185 202465 r.mEnd = middle;
186 202465 return middle;
187 }
188 };// end of LeafRange
189
190 /// @brief Constructor from a tree reference and an auxiliary buffer count
191 /// @note The default is no auxiliary buffers
192 58849 LeafManager(TreeType& tree, size_t auxBuffersPerLeaf=0, bool serial=false)
193 : mTree(&tree)
194 , mLeafCount(0)
195 , mAuxBufferCount(0)
196
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 58849 , mAuxBuffersPerLeaf(auxBuffersPerLeaf)
197 {
198 58849 this->rebuild(serial);
199 58849 }
200
201 /// @brief Construct directly from an existing array of leafnodes.
202 /// @warning The leafnodes are implicitly assumed to exist in the
203 /// input @a tree.
204 18442 LeafManager(TreeType& tree, LeafType** begin, LeafType** end,
205 size_t auxBuffersPerLeaf=0, bool serial=false)
206 : mTree(&tree)
207 18442 , mLeafCount(end-begin)
208 , mAuxBufferCount(0)
209 , mAuxBuffersPerLeaf(auxBuffersPerLeaf)
210 18442 , mLeafPtrs(new LeafType*[mLeafCount])
211
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 36884 , mLeafs(mLeafPtrs.get())
212 {
213 18442 size_t n = mLeafCount;
214 LeafType **target = mLeafs, **source = begin;
215
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216
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 18442 if (auxBuffersPerLeaf) this->initAuxBuffers(serial);
217 18442 }
218
219 /// Shallow copy constructor called by tbb::parallel_for() threads
220 ///
221 /// @note This should never get called directly
222 2620 LeafManager(const LeafManager& other)
223 2620 : mTree(other.mTree)
224 2620 , mLeafCount(other.mLeafCount)
225 2620 , mAuxBufferCount(other.mAuxBufferCount)
226 2620 , mAuxBuffersPerLeaf(other.mAuxBuffersPerLeaf)
227 2620 , mLeafs(other.mLeafs)
228
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229
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 2620 , mTask(other.mTask)
230 {
231 }
232
233 /// @brief (Re)initialize by resizing (if necessary) and repopulating the leaf array
234 /// and by deleting existing auxiliary buffers and allocating new ones.
235 /// @details Call this method if the tree's topology, and therefore the number
236 /// of leaf nodes, changes. New auxiliary buffers are initialized with copies
237 /// of corresponding leaf node buffers.
238 void rebuild(bool serial=false)
239 {
240
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 40809 this->initLeafArray(serial);
241
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 40809 this->initAuxBuffers(serial);
242 32187 }
243 //@{
244 /// Repopulate the leaf array and delete and reallocate auxiliary buffers.
245 void rebuild(size_t auxBuffersPerLeaf, bool serial=false)
246 {
247 mAuxBuffersPerLeaf = auxBuffersPerLeaf;
248 this->rebuild(serial);
249 }
250 void rebuild(TreeType& tree, bool serial=false)
251 {
252 mTree = &tree;
253 this->rebuild(serial);
254 }
255 void rebuild(TreeType& tree, size_t auxBuffersPerLeaf, bool serial=false)
256 {
257 mTree = &tree;
258 mAuxBuffersPerLeaf = auxBuffersPerLeaf;
259 this->rebuild(serial);
260 }
261 //@}
262 /// @brief Change the number of auxiliary buffers.
263 /// @details If auxBuffersPerLeaf is 0, all existing auxiliary buffers are deleted.
264 /// New auxiliary buffers are initialized with copies of corresponding leaf node buffers.
265 /// This method does not rebuild the leaf array.
266 void rebuildAuxBuffers(size_t auxBuffersPerLeaf, bool serial=false)
267 {
268 650 mAuxBuffersPerLeaf = auxBuffersPerLeaf;
269
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 650 this->initAuxBuffers(serial);
270 2 }
271 /// @brief Remove the auxiliary buffers, but don't rebuild the leaf array.
272 480 void removeAuxBuffers() { this->rebuildAuxBuffers(0); }
273
274 /// @brief Remove the auxiliary buffers and rebuild the leaf array.
275 void rebuildLeafArray(bool serial = false)
276 {
277 this->removeAuxBuffers();
278 34 this->initLeafArray(serial);
279 }
280
281 /// @brief Return the total number of allocated auxiliary buffers.
282
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 9 size_t auxBufferCount() const { return mAuxBufferCount; }
283 /// @brief Return the number of auxiliary buffers per leaf node.
284
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 8 size_t auxBuffersPerLeaf() const { return mAuxBuffersPerLeaf; }
285
286 /// @brief Return the number of leaf nodes.
287
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 59375 size_t leafCount() const { return mLeafCount; }
288
289 /// @brief Return the number of active voxels in the leaf nodes.
290 /// @note Multi-threaded for better performance than Tree::activeLeafVoxelCount
291 21 Index64 activeLeafVoxelCount() const
292 {
293 42 return tbb::parallel_reduce(this->leafRange(), Index64(0),
294 634 [] (const LeafRange& range, Index64 sum) -> Index64 {
295 20390647 for (const auto& leaf: range) { sum += leaf.onVoxelCount(); }
296 634 return sum;
297 },
298 19 [] (Index64 n, Index64 m) -> Index64 { return n + m; });
299 }
300
301 /// Return a const reference to tree associated with this manager.
302 const TreeType& tree() const { return *mTree; }
303
304 /// Return a reference to the tree associated with this manager.
305
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 35326 TreeType& tree() { return *mTree; }
306
307 /// Return a const reference to root node associated with this manager.
308 ✗ const RootNodeType& root() const { return mTree->root(); }
309
310 /// Return a reference to the root node associated with this manager.
311
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 3 RootNodeType& root() { return mTree->root(); }
312
313 /// Return @c true if the tree associated with this manager is immutable.
314 bool isConstTree() const { return this->IsConstTree; }
315
316 /// @brief Return a pointer to the leaf node at index @a leafIdx in the array.
317 /// @note For performance reasons no range check is performed (other than an assertion)!
318
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 43792090 LeafType& leaf(size_t leafIdx) const { assert(leafIdx<mLeafCount); return *mLeafs[leafIdx]; }
319
320 /// @brief Return the leaf or auxiliary buffer for the leaf node at index @a leafIdx.
321 /// If @a bufferIdx is zero, return the leaf buffer, otherwise return the nth
322 /// auxiliary buffer, where n = @a bufferIdx - 1.
323 ///
324 /// @note For performance reasons no range checks are performed on the inputs
325 /// (other than assertions)! Since auxiliary buffers, unlike leaf buffers,
326 /// might not exist, be especially careful when specifying the @a bufferIdx.
327 /// @note For const trees, this method always returns a reference to a const buffer.
328 /// It is safe to @c const_cast and modify any auxiliary buffer (@a bufferIdx > 0),
329 /// but it is not safe to modify the leaf buffer (@a bufferIdx = 0).
330 130251 BufferType& getBuffer(size_t leafIdx, size_t bufferIdx) const
331 {
332
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 130251 assert(leafIdx < mLeafCount);
333
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 130251 assert(bufferIdx == 0 || bufferIdx - 1 < mAuxBuffersPerLeaf);
334
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 130251 return bufferIdx == 0 ? mLeafs[leafIdx]->buffer()
335 89211 : mAuxBuffers[leafIdx * mAuxBuffersPerLeaf + bufferIdx - 1];
336 }
337
338 /// @brief Return a @c tbb::blocked_range of leaf array indices.
339 ///
340 /// @note Consider using leafRange() instead, which provides access methods
341 /// to leaf nodes and buffers.
342
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 29112 RangeType getRange(size_t grainsize = 1) const { return RangeType(0, mLeafCount, grainsize); }
343
344 /// Return a TBB-compatible LeafRange.
345 LeafRange leafRange(size_t grainsize = 1) const
346 {
347
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 28912 return LeafRange(0, mLeafCount, *this, grainsize);
348 }
349
350 /// @brief Swap each leaf node's buffer with the nth corresponding auxiliary buffer,
351 /// where n = @a bufferIdx.
352 /// @return @c true if the swap was successful
353 /// @param bufferIdx index of the buffer that will be swapped with
354 /// the corresponding leaf node buffer
355 /// @param serial if false, swap buffers in parallel using multiple threads.
356 /// @note Recall that the indexing of auxiliary buffers is 1-based, since
357 /// buffer index 0 denotes the leaf node buffer. So buffer index 1 denotes
358 /// the first auxiliary buffer.
359 738 bool swapLeafBuffer(size_t bufferIdx, bool serial = false)
360 {
361 namespace ph = std::placeholders;
362
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 738 if (bufferIdx == 0 || bufferIdx > mAuxBuffersPerLeaf || this->isConstTree()) return false;
363 694 mTask = std::bind(&LeafManager::doSwapLeafBuffer, ph::_1, ph::_2, bufferIdx - 1);
364
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 1388 this->cook(serial ? 0 : 512);
365 694 return true;//success
366 }
367 /// @brief Swap any two buffers for each leaf node.
368 /// @note Recall that the indexing of auxiliary buffers is 1-based, since
369 /// buffer index 0 denotes the leaf node buffer. So buffer index 1 denotes
370 /// the first auxiliary buffer.
371
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 2 bool swapBuffer(size_t bufferIdx1, size_t bufferIdx2, bool serial = false)
372 {
373 namespace ph = std::placeholders;
374
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 2 const size_t b1 = std::min(bufferIdx1, bufferIdx2);
375 2 const size_t b2 = std::max(bufferIdx1, bufferIdx2);
376
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 2 if (b1 == b2 || b2 > mAuxBuffersPerLeaf) return false;
377 ✗ if (b1 == 0) {
378 if (this->isConstTree()) return false;
379 ✗ mTask = std::bind(&LeafManager::doSwapLeafBuffer, ph::_1, ph::_2, b2-1);
380 } else {
381 ✗ mTask = std::bind(&LeafManager::doSwapAuxBuffer, ph::_1, ph::_2, b1-1, b2-1);
382 }
383 ✗ this->cook(serial ? 0 : 512);
384 ✗ return true;//success
385 }
386
387 /// @brief Sync up the specified auxiliary buffer with the corresponding leaf node buffer.
388 /// @return @c true if the sync was successful
389 /// @param bufferIdx index of the buffer that will contain a
390 /// copy of the corresponding leaf node buffer
391 /// @param serial if false, sync buffers in parallel using multiple threads.
392 /// @note Recall that the indexing of auxiliary buffers is 1-based, since
393 /// buffer index 0 denotes the leaf node buffer. So buffer index 1 denotes
394 /// the first auxiliary buffer.
395 2 bool syncAuxBuffer(size_t bufferIdx, bool serial = false)
396 {
397 namespace ph = std::placeholders;
398
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 2 if (bufferIdx == 0 || bufferIdx > mAuxBuffersPerLeaf) return false;
399 2 mTask = std::bind(&LeafManager::doSyncAuxBuffer, ph::_1, ph::_2, bufferIdx - 1);
400
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 4 this->cook(serial ? 0 : 64);
401 2 return true;//success
402 }
403
404 /// @brief Sync up all auxiliary buffers with their corresponding leaf node buffers.
405 /// @return true if the sync was successful
406 /// @param serial if false, sync buffers in parallel using multiple threads.
407 82920 bool syncAllBuffers(bool serial = false)
408 {
409 namespace ph = std::placeholders;
410
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 82920 switch (mAuxBuffersPerLeaf) {
411 case 0: return false;//nothing to do
412 1078 case 1: mTask = std::bind(&LeafManager::doSyncAllBuffers1, ph::_1, ph::_2); break;
413 6 case 2: mTask = std::bind(&LeafManager::doSyncAllBuffers2, ph::_1, ph::_2); break;
414 64 default: mTask = std::bind(&LeafManager::doSyncAllBuffersN, ph::_1, ph::_2); break;
415 }
416
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 2296 this->cook(serial ? 0 : 64);
417 1148 return true;//success
418 }
419
420 /// @brief Threaded method that applies a user-supplied functor
421 /// to each leaf node in the LeafManager.
422 ///
423 /// @details The user-supplied functor needs to define the methods
424 /// required for tbb::parallel_for.
425 ///
426 /// @param op user-supplied functor, see examples for interface details.
427 /// @param threaded optional toggle to disable threading, on by default.
428 /// @param grainSize optional parameter to specify the grainsize
429 /// for threading, one by default.
430 ///
431 /// @warning The functor object is deep-copied to create TBB tasks.
432 /// This allows the function to use non-thread-safe members
433 /// like a ValueAccessor.
434 ///
435 /// @par Example:
436 /// @code
437 /// // Functor to offset a tree's voxel values with values from another tree.
438 /// template<typename TreeType>
439 /// struct OffsetOp
440 /// {
441 /// using Accessor = tree::ValueAccessor<const TreeType>;
442 ///
443 /// OffsetOp(const TreeType& tree): mRhsTreeAcc(tree) {}
444 ///
445 /// template <typename LeafNodeType>
446 /// void operator()(LeafNodeType &lhsLeaf, size_t) const
447 /// {
448 /// const LeafNodeType *rhsLeaf = mRhsTreeAcc.probeConstLeaf(lhsLeaf.origin());
449 /// if (rhsLeaf) {
450 /// typename LeafNodeType::ValueOnIter iter = lhsLeaf.beginValueOn();
451 /// for (; iter; ++iter) {
452 /// iter.setValue(iter.getValue() + rhsLeaf->getValue(iter.pos()));
453 /// }
454 /// }
455 /// }
456 /// Accessor mRhsTreeAcc;
457 /// };
458 ///
459 /// // usage:
460 /// tree::LeafManager<FloatTree> leafNodes(lhsTree);
461 /// leafNodes.foreach(OffsetOp<FloatTree>(rhsTree));
462 ///
463 /// // A functor that performs a min operation between different auxiliary buffers.
464 /// template<typename LeafManagerType>
465 /// struct MinOp
466 /// {
467 /// using BufferType = typename LeafManagerType::BufferType;
468 ///
469 /// MinOp(LeafManagerType& leafNodes): mLeafs(leafNodes) {}
470 ///
471 /// template <typename LeafNodeType>
472 /// void operator()(LeafNodeType &leaf, size_t leafIndex) const
473 /// {
474 /// // get the first buffer
475 /// BufferType& buffer = mLeafs.getBuffer(leafIndex, 1);
476 ///
477 /// // min ...
478 /// }
479 /// LeafManagerType& mLeafs;
480 /// };
481 /// @endcode
482 template<typename LeafOp>
483
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 70615 void foreach(const LeafOp& op, bool threaded = true, size_t grainSize=1)
484 {
485 LeafTransformer<LeafOp> transform(op);
486
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 70613 transform.run(this->leafRange(grainSize), threaded);
487 70613 }
488
489 /// @brief Threaded method that applies a user-supplied functor
490 /// to each leaf node in the LeafManager. Unlike foreach
491 /// (defined above) this method performs a reduction on
492 /// all the leaf nodes.
493 ///
494 /// @details The user-supplied functor needs to define the methods
495 /// required for tbb::parallel_reduce.
496 ///
497 /// @param op user-supplied functor, see examples for interface details.
498 /// @param threaded optional toggle to disable threading, on by default.
499 /// @param grainSize optional parameter to specify the grainsize
500 /// for threading, one by default.
501 ///
502 /// @warning The functor object is deep-copied to create TBB tasks.
503 /// This allows the function to use non-thread-safe members
504 /// like a ValueAccessor.
505 ///
506 /// @par Example:
507 /// @code
508 /// // Functor to count the number of negative (active) leaf values
509 /// struct CountOp
510 /// {
511 /// CountOp() : mCounter(0) {}
512 /// CountOp(const CountOp &other) : mCounter(other.mCounter) {}
513 /// CountOp(const CountOp &other, tbb::split) : mCounter(0) {}
514 /// template <typename LeafNodeType>
515 /// void operator()(LeafNodeType &leaf, size_t)
516 /// {
517 /// typename LeafNodeType::ValueOnIter iter = leaf.beginValueOn();
518 /// for (; iter; ++iter) if (*iter < 0.0f) ++mCounter;
519 /// }
520 /// void join(const CountOp &other) {mCounter += other.mCounter;}
521 /// size_t mCounter;
522 /// };
523 ///
524 /// // usage:
525 /// tree::LeafManager<FloatTree> leafNodes(tree);
526 /// MinValueOp min;
527 /// leafNodes.reduce(min);
528 /// std::cerr << "Number of negative active voxels = " << min.mCounter << std::endl;
529 ///
530 /// @endcode
531 template<typename LeafOp>
532 60 void reduce(LeafOp& op, bool threaded = true, size_t grainSize=1)
533 {
534 LeafReducer<LeafOp> transform(op);
535
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 60 transform.run(this->leafRange(grainSize), threaded);
536 }
537
538 template<typename ArrayT>
539 OPENVDB_DEPRECATED_MESSAGE("Use Tree::getNodes()") void getNodes(ArrayT& array)
540 {
541 using T = typename ArrayT::value_type;
542 static_assert(std::is_pointer<T>::value, "argument to getNodes() must be a pointer array");
543 using LeafT = typename std::conditional<std::is_const<
544 typename std::remove_pointer<T>::type>::value, const LeafType, LeafType>::type;
545
546 OPENVDB_NO_UNREACHABLE_CODE_WARNING_BEGIN
547 if (std::is_same<T, LeafT*>::value) {
548 array.resize(mLeafCount);
549 for (size_t i=0; i<mLeafCount; ++i) array[i] = reinterpret_cast<T>(mLeafs[i]);
550 } else {
551 mTree->getNodes(array);
552 }
553 OPENVDB_NO_UNREACHABLE_CODE_WARNING_END
554 }
555
556 template<typename ArrayT>
557 OPENVDB_DEPRECATED_MESSAGE("Use Tree::getNodes()") void getNodes(ArrayT& array) const
558 {
559 using T = typename ArrayT::value_type;
560 static_assert(std::is_pointer<T>::value, "argument to getNodes() must be a pointer array");
561 static_assert(std::is_const<typename std::remove_pointer<T>::type>::value,
562 "argument to getNodes() must be an array of const node pointers");
563
564 OPENVDB_NO_UNREACHABLE_CODE_WARNING_BEGIN
565 if (std::is_same<T, const LeafType*>::value) {
566 array.resize(mLeafCount);
567 for (size_t i=0; i<mLeafCount; ++i) array[i] = reinterpret_cast<T>(mLeafs[i]);
568 } else {
569 mTree->getNodes(array);
570 }
571 OPENVDB_NO_UNREACHABLE_CODE_WARNING_END
572 }
573
574 /// @brief Generate a linear array of prefix sums of offsets into the
575 /// active voxels in the leafs. So @a offsets[n]+m is the offset to the
576 /// mth active voxel in the nth leaf node (useful for
577 /// user-managed value buffers, e.g. in tools/LevelSetAdvect.h).
578 /// @return The total number of active values in the leaf nodes
579 /// @param offsets array of prefix sums of offsets to active voxels
580 /// @param size on input, the size of @a offsets; on output, its new size
581 /// @param grainSize optional grain size for threading
582 /// @details If @a offsets is @c nullptr or @a size is smaller than the
583 /// total number of active voxels (the return value) then @a offsets
584 /// is reallocated and @a size equals the total number of active voxels.
585 ✗ size_t getPrefixSum(size_t*& offsets, size_t& size, size_t grainSize=1) const
586 {
587 ✗ if (offsets == nullptr || size < mLeafCount) {
588 ✗ delete [] offsets;
589 ✗ offsets = new size_t[mLeafCount];
590 ✗ size = mLeafCount;
591 }
592 ✗ size_t prefix = 0;
593 ✗ if ( grainSize > 0 ) {
594 ✗ PrefixSum tmp(this->leafRange( grainSize ), offsets, prefix);
595 } else {// serial
596 ✗ for (size_t i=0; i<mLeafCount; ++i) {
597 ✗ offsets[i] = prefix;
598 ✗ prefix += mLeafs[i]->onVoxelCount();
599 }
600 }
601 ✗ return prefix;
602 }
603
604 ////////////////////////////////////////////////////////////////////////////////////
605 // All methods below are for internal use only and should never be called directly
606
607 /// Used internally by tbb::parallel_for() - never call it directly!
608
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 2876 void operator()(const RangeType& r) const
609 {
610
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 2876 if (mTask) mTask(const_cast<LeafManager*>(this), r);
611 ✗ else OPENVDB_THROW(ValueError, "task is undefined");
612 }
613
614 private:
615
616 81686 void initLeafArray(bool serial = false)
617 {
618 // Build an array of all nodes that have leaf nodes as their immediate children
619
620 using NodeChainT = typename NodeChain<RootNodeType, RootNodeType::LEVEL>::Type;
621 using NonConstLeafParentT = typename NodeChainT::template Get</*Level=*/1>;
622 using LeafParentT = typename CopyConstness<TreeType, NonConstLeafParentT>::Type;
623
624 std::deque<LeafParentT*> leafParents;
625
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 81686 mTree->getNodes(leafParents);
626
627 // Compute the leaf counts for each node
628
629 std::vector<Index32> leafCounts;
630
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 81686 if (serial) {
631
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 6 leafCounts.reserve(leafParents.size());
632
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 8 for (LeafParentT* leafParent : leafParents) {
633
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 2 leafCounts.push_back(leafParent->childCount());
634 }
635 } else {
636
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 81680 leafCounts.resize(leafParents.size());
637
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 81680 tbb::parallel_for(
638 // with typical node sizes and SSE enabled, there are only a handful
639 // of instructions executed per-operation with a default grainsize
640 // of 1, so increase to 64 to reduce parallel scheduling overhead
641 tbb::blocked_range<size_t>(0, leafParents.size(), /*grainsize=*/64),
642 127880 [&](tbb::blocked_range<size_t>& range)
643 {
644
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 127880 for (size_t i = range.begin(); i < range.end(); i++) {
645 86888 leafCounts[i] = leafParents[i]->childCount();
646 }
647 }
648 );
649 }
650
651 // Turn leaf counts into a cumulative histogram and obtain total leaf count
652
653
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 173880 for (size_t i = 1; i < leafCounts.size(); i++) {
654 92194 leafCounts[i] += leafCounts[i-1];
655 }
656
657
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 81686 const size_t leafCount = leafCounts.empty() ? 0 : leafCounts.back();
658
659 // Allocate (or deallocate) the leaf pointer array
660
661
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662
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663
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 67626 mLeafPtrs.reset(new LeafType*[leafCount]);
664 67626 mLeafs = mLeafPtrs.get();
665 } else {
666 mLeafPtrs.reset();
667 ✗ mLeafs = nullptr;
668 }
669 67626 mLeafCount = leafCount;
670 }
671
672
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 81686 if (mLeafCount == 0) return;
673
674 // Populate the leaf node pointers
675
676
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 76640 if (serial) {
677 2 LeafType** leafPtr = mLeafs;
678
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 4 for (LeafParentT* leafParent : leafParents) {
679
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 252 for (auto iter = leafParent->beginChildOn(); iter; ++iter) {
680
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 250 *leafPtr++ = &iter.getValue();
681 }
682 }
683 } else {
684
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 76638 tbb::parallel_for(
685 tbb::blocked_range<size_t>(0, leafParents.size()),
686
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687 {
688 size_t i = range.begin();
689 73865 LeafType** leafPtr = mLeafs;
690
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 73865 if (i > 0) leafPtr += leafCounts[i-1];
691
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692
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 41923971 for (auto iter = leafParents[i]->beginChildOn(); iter; ++iter) {
693 41755141 *leafPtr++ = &iter.getValue();
694 }
695 }
696 }
697 );
698 }
699 }
700
701 82918 void initAuxBuffers(bool serial)
702 {
703 82918 const size_t auxBufferCount = mLeafCount * mAuxBuffersPerLeaf;
704
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 82918 if (auxBufferCount != mAuxBufferCount) {
705
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 2222 if (auxBufferCount > 0) {
706
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 47576 mAuxBufferPtrs.reset(new NonConstBufferType[auxBufferCount]);
707 1128 mAuxBuffers = mAuxBufferPtrs.get();
708 } else {
709 mAuxBufferPtrs.reset();
710 1094 mAuxBuffers = nullptr;
711 }
712 2222 mAuxBufferCount = auxBufferCount;
713 }
714 82918 this->syncAllBuffers(serial);
715 82918 }
716
717 2400 void cook(size_t grainsize)
718 {
719
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 2400 if (grainsize>0) {
720 2400 tbb::parallel_for(this->getRange(grainsize), *this);
721 } else {
722 ✗ (*this)(this->getRange());
723 }
724 }
725
726 633 void doSwapLeafBuffer(const RangeType& r, size_t auxBufferIdx)
727 {
728 633 LeafManagerImpl<LeafManager>::doSwapLeafBuffer(
729 r, auxBufferIdx, mLeafs, mAuxBuffers, mAuxBuffersPerLeaf);
730 633 }
731
732 ✗ void doSwapAuxBuffer(const RangeType& r, size_t auxBufferIdx1, size_t auxBufferIdx2)
733 {
734 ✗ for (size_t N = mAuxBuffersPerLeaf, n = N*r.begin(), m = N*r.end(); n != m; n+=N) {
735 ✗ mAuxBuffers[n + auxBufferIdx1].swap(mAuxBuffers[n + auxBufferIdx2]);
736 }
737 }
738
739 8 void doSyncAuxBuffer(const RangeType& r, size_t auxBufferIdx)
740 {
741
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 418 for (size_t n = r.begin(), m = r.end(), N = mAuxBuffersPerLeaf; n != m; ++n) {
742 410 mAuxBuffers[n*N + auxBufferIdx] = mLeafs[n]->buffer();
743 }
744 8 }
745
746 1506 void doSyncAllBuffers1(const RangeType& r)
747 {
748
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 36582 for (size_t n = r.begin(), m = r.end(); n != m; ++n) {
749
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 35076 mAuxBuffers[n] = mLeafs[n]->buffer();
750 }
751 }
752
753 24 void doSyncAllBuffers2(const RangeType& r)
754 {
755
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 1254 for (size_t n = r.begin(), m = r.end(); n != m; ++n) {
756
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 1230 const BufferType& leafBuffer = mLeafs[n]->buffer();
757
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 1230 mAuxBuffers[2*n ] = leafBuffer;
758
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 1230 mAuxBuffers[2*n+1] = leafBuffer;
759 }
760 }
761
762 64 void doSyncAllBuffersN(const RangeType& r)
763 {
764
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 3308 for (size_t n = r.begin(), m = r.end(), N = mAuxBuffersPerLeaf; n != m; ++n) {
765 3244 const BufferType& leafBuffer = mLeafs[n]->buffer();
766
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 12976 for (size_t i=n*N, j=i+N; i!=j; ++i) mAuxBuffers[i] = leafBuffer;
767 }
768 }
769
770 /// @brief Private member class that applies a user-defined
771 /// functor to perform parallel_for on all the leaf nodes.
772 template<typename LeafOp>
773 1919 struct LeafTransformer
774 {
775 35509 LeafTransformer(const LeafOp &leafOp) : mLeafOp(leafOp)
776 {
777 }
778 void run(const LeafRange &range, bool threaded) const
779 {
780
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 35599 threaded ? tbb::parallel_for(range, *this) : (*this)(range);
781 }
782 192391 void operator()(const LeafRange &range) const
783 {
784
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 1466563 for (typename LeafRange::Iterator it = range.begin(); it; ++it) mLeafOp(*it, it.pos());
785 192389 }
786 const LeafOp mLeafOp;
787 };// LeafTransformer
788
789 /// @brief Private member class that applies a user-defined
790 /// functor to perform parallel_reduce on all the leaf nodes.
791 template<typename LeafOp>
792 60 struct LeafReducer
793 {
794
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 30 LeafReducer(LeafOp &leafOp) : mLeafOp(&leafOp)
795 {
796 }
797 46 LeafReducer(const LeafReducer &other, tbb::split)
798 14 : mLeafOpPtr(std::make_unique<LeafOp>(*(other.mLeafOp), tbb::split()))
799 60 , mLeafOp(mLeafOpPtr.get())
800 {
801 }
802 void run(const LeafRange& range, bool threaded)
803 {
804
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 30 threaded ? tbb::parallel_reduce(range, *this) : (*this)(range);
805 }
806 3138 void operator()(const LeafRange& range)
807 {
808 3138 LeafOp &op = *mLeafOp;//local registry
809
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 40888702 for (typename LeafRange::Iterator it = range.begin(); it; ++it) op(*it, it.pos());
810 }
811 60 void join(const LeafReducer& other) { mLeafOp->join(*(other.mLeafOp)); }
812 std::unique_ptr<LeafOp> mLeafOpPtr;
813 LeafOp *mLeafOp = nullptr;
814 };// LeafReducer
815
816 // Helper class to compute a prefix sum of offsets to active voxels
817 struct PrefixSum
818 {
819 ✗ PrefixSum(const LeafRange& r, size_t* offsets, size_t& prefix)
820 ✗ : mOffsets(offsets)
821 {
822 ✗ tbb::parallel_for( r, *this);
823 ✗ for (size_t i=0, leafCount = r.size(); i<leafCount; ++i) {
824 ✗ size_t tmp = offsets[i];
825 ✗ offsets[i] = prefix;
826 ✗ prefix += tmp;
827 }
828 }
829 ✗ inline void operator()(const LeafRange& r) const {
830 ✗ for (typename LeafRange::Iterator i = r.begin(); i; ++i) {
831 ✗ mOffsets[i.pos()] = i->onVoxelCount();
832 }
833 }
834 size_t* mOffsets;
835 };// PrefixSum
836
837 using FuncType = typename std::function<void (LeafManager*, const RangeType&)>;
838
839 TreeType* mTree;
840 size_t mLeafCount, mAuxBufferCount, mAuxBuffersPerLeaf;
841 std::unique_ptr<LeafType*[]> mLeafPtrs;
842 LeafType** mLeafs = nullptr;//array of LeafNode pointers
843 std::unique_ptr<NonConstBufferType[]> mAuxBufferPtrs;
844 NonConstBufferType* mAuxBuffers = nullptr;//array of auxiliary buffers
845 FuncType mTask = nullptr;
846 };//end of LeafManager class
847
848
849 // Partial specializations of LeafManager methods for const trees
850 template<typename TreeT>
851 struct LeafManagerImpl<LeafManager<const TreeT> >
852 {
853 using ManagerT = LeafManager<const TreeT>;
854 using RangeT = typename ManagerT::RangeType;
855 using LeafT = typename ManagerT::LeafType;
856 using BufT = typename ManagerT::BufferType;
857
858 static inline void doSwapLeafBuffer(const RangeT&, size_t /*auxBufferIdx*/,
859 LeafT**, BufT*, size_t /*bufsPerLeaf*/)
860 {
861 // Buffers can't be swapped into const trees.
862 }
863 };
864
865 } // namespace tree
866 } // namespace OPENVDB_VERSION_NAME
867 } // namespace openvdb
868
869 #endif // OPENVDB_TREE_LEAFMANAGER_HAS_BEEN_INCLUDED
870